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Genetic and clinical assessment of 2009 pandemic influenza in southern China

Farooqui, Amber and Lei, Yanchang and Wang, Pusheng and Huang, Jianyun and Lin, Jie and Li, Guishuang and Leon, Alberto J. and Zhao, Zhen and Kelvin, David J. (2011) Genetic and clinical assessment of 2009 pandemic influenza in southern China. The Journal of Infection in Developing Countries, Vol. 5 (10), p. 700-710. ISSN 1972-2680. Article.

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Abstract

Introduction: South China has a proven role in the global epidemiology of previous influenza outbreaks due to its dual seasonal pattern. We present the virologic, genetic and clinical characterization of pandemic H1N1 influenza infection (pH1N1) in Shantou and Nanchang, cities in southern China, during the second wave of the 2009-2010 pandemic.
Methodology: Nasopharyngeal swabs were collected from 165 individuals with influenza-like illness (ILI) who presented to the hospitals in Shantou and Nanchang. Laboratory diagnosis and characterization was performed by real-time PCR, virus isolation in embryonated chicken eggs, and sequencing.

Results: pH1N1 activity was sustained in three different temporal patterns throughout the study period. The overall positivity rate of pH1N1 was 50% with major distribution among young adults between the ages of 13 and 30 years. High fever, cough, expectoration, chest pain, myalgia, nasal discharge and efficient viral replication were observed as major clinical markers whereas a substantial number of afebrile cases (17%) was also observed. Rate of hospitalization and disease severity (39%) and recovery (100%) were also high within the region. Furthermore, severe complications were likely to develop in young adults upon pH1N1 infection. Genetic characterization of the HA and NA genes of pH1N1 strains exhibited homogenous spread of pH1N1 strains with 99% identity with prototypic strains; however, minor unique mutations were also observed in the HA gene.

Conclusion: The study illustrates the detailed characteristics of 2009 influenza pandemic in southern parts of China that might help to strategize preparedness for future pandemics and subsequent influenza seasons.

Item Type:Article
ID Code:6575
Status:Published
Refereed:Yes
Uncontrolled Keywords:Pandemic H1N1 influenza, genetic characterization, clinical presentation, hemagglutinin, neuraminidase
Subjects:Area 06 - Scienze mediche > MED/07 Microbiologia e microbiologia clinica
Divisions:002 Altri enti e centri di ricerca del Nord Sardegna > Porto Conte Ricerche, Alghero
Publisher:OLoeP
ISSN:1972-2680
Copyright Holders:© 2011 Farooqui et al.
Deposited On:17 Nov 2011 10:24

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