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Transmission of haplotypes of microsatellite markers rather than single marker alleles in the mapping of a putative type 1 diabetes susceptibility gene (IDDM6)

Merriman, Tony R. and Eaves, Iain A. and Twells, Rebecca C. J. and Merriman, Marilyn E. and Danoy, Patrick A. and Muxworthy, Claire E. and Hunter, Kara M. D. and Cox, Roger D. and Cucca, Francesco and McKinney, Patricia A. and Shield, Julian P. and Baum, J. David and Tuomilehto, Jaakko and Tuomilehto Wolf, Eva and Ionescu Tirgoviste, Constantin and Joner, Geir and Thorsby, Erik and Undlien, Dag Erik and Pociot, Flemming and Nerup, Jørn and Ronningen, Kjersti Skjold and Bain, Stephen Charles and Todd, John A. (1998) Transmission of haplotypes of microsatellite markers rather than single marker alleles in the mapping of a putative type 1 diabetes susceptibility gene (IDDM6). Human Molecular Genetics, Vol. 7 (3), p. 517-524. eISSN 1460-2083. Article.

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DOI: 10.1093/hmg/7.3.517

Abstract

Allelic association methods based on increased transmission of marker alleles will have to be employed for the mapping of complex disease susceptibility genes. However, because the extent of association of single marker alleles with disease is a function of the relative frequency of the allele on disease-associated chromosomes versus non disease-predisposing chromosomes, the most associated marker allele in a region will not necessarily be closest to the disease locus. To overcome this problem we describe a haplotype-based approach developed for mapping of the putative type 1 diabetes susceptibility gene IDDM6. Ten microsatellite markers spanning a 550 kb segment of chromosome 18q21 in the putative IDDM6 region were genotyped in 1708 type 1 diabetic Caucasian families from seven countries. The most likely ancestral diabetogenic chromosome was reconstructed in a stepwise fashion by analysing linkage disequilibrium between a previously defined haplotype of three adjacent markers and the next marker along the chromosome. A plot of transmission from heterozygous parents to affected offspring of single marker alleles present on the ancestral chromosome versus the physical distance between them, was compared with a plot of transmission of haplotypes of groups of three adjacent markers. Analysing transmission of haplotypes largely negated apparent decreases in transmission of single marker alleles. Peak support for association of the D18S487 region with IDDM6 is P = 0.0002 (corrected P = 0.01). The results also demonstrate the utility of polymorphic microsatellite markers to trace and delineate extended and presumably ancient haplotypes in the analysis of common disease and in the search for identical-by-descent chromosome regions that carry an aetiological variant.

Item Type:Article
ID Code:4247
Status:Published
Refereed:Yes
Uncontrolled Keywords:Genome-wide search, linkage disequilibrium, insulin gene, multiple-sclerosis, complex traits, mellitus, loci, region, likelihood, nationwide
Subjects:Area 06 - Scienze mediche > MED/03 Genetica medica
Divisions:001 Università di Sassari > 01 Dipartimenti > Scienze biomediche
Publisher:Oxford University Press
eISSN:1460-2083
Deposited On:23 Jul 2010 10:19

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