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Genome and transcriptome scale portrait of sigma factors in Mycobacterium avium subsp. paratuberculosis

Sechi, Leonardo Antonio and Felis, Giovanna E. and Ahmed, Niyaz and Paccagnini, Daniela and Usai, Donatella and Ortu, Silvia and Molicotti, Paola and Zanetti, Stefania Anna Lucia (2007) Genome and transcriptome scale portrait of sigma factors in Mycobacterium avium subsp. paratuberculosis. Infection, Genetics and Evolution, Vol. 7 (4), p. 424-432. ISSN 1567-1348. Article.

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DOI: 10.1016/j.meegid.2007.01.001

Abstract

Mycobacterium avium subsp. paratuberculosis (MAP) is the etiological agent of Johne's disease (JD), a chronic gastroenteritis of ruminants and other animals, including primates. Many evidences suggested association of MAP to Crohn's disease, a chronic granulomatous gastrointestinal disease of humans with strong similarities with JD.
The present study attempts to evaluate global gene regulation in MAP, which has not been addressed previously, despite the availability of MAP genome sequence. For this purpose, we investigated: (i) the presence of sigma factors and their relationship to sigma factors of other mycobacteria (M. avium subsp. avium, M. tuberculosis, M. bovis, M. leprae and M. smegmatis), and (ii) their expression during different growth conditions and in vitro infection of intestinal epithelial Caco2 cells. MAP genome contains 19 putative sigma factor, but only 12 belong to gene families common to other mycobacteria. Gene expression was evaluated with Real-Time PCR during growth in 7H9 medium and mycobactin J, in 7H9 medium plus mycobactin J and lisozyme, and during infection of Caco2 cells: very different expression patterns were observed and, on the whole, only 7 sigma factors were found to be expressed.
sigJ was upregulated during the infection of Caco2 cells. Even if only few sigma factors were expressed in the three conditions tested, the overall high numbers of MAP sigma factors suggests a noteworthy flexibility of this pathogen. Thus, this first report on expression of MAP sigma factors opens the way to an extensive characterization of global gene regulation, as a key to understand strategies of survival and mechanisms of infections used by this organism.

Item Type:Article
ID Code:2860
Status:Published
Refereed:Yes
Uncontrolled Keywords:In silico analysis, phylogenetic tree and expression of Sigma factor, Mycobacterium avium subspecies paratuberculosis, Caco2 cell infection
Subjects:Area 06 - Scienze mediche > MED/07 Microbiologia e microbiologia clinica
Divisions:001 Università di Sassari > 01 Dipartimenti > Scienze biomediche
002 Altri enti e centri di ricerca del Nord Sardegna > ISOGEM-International Society for Genomic and Evolutionary Microbiology, Sassari
Publisher:Elsevier
ISSN:1567-1348
Deposited On:28 Aug 2009 12:32

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