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High differentiation among eight villages in a secluded area of Sardinia revealed by genome-wide high density SNPs analysis

Pistis, Giorgio and Piras, Ignazio and Persico, Ivana and Sassu, Alessandro and Picciau, Andrea and Prodi, Dionigio A. and Fraumene, Cristina and Mocci, Evelina and Manias, Maria Teresa and Atzeni, Rossano and Cosso, Massimiliano and Pirastu, Mario and Angius, Andrea (2009) High differentiation among eight villages in a secluded area of Sardinia revealed by genome-wide high density SNPs analysis. PLoS One, Vol. 4 (2), e4654. ISSN 1932-6203. Article.

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DOI: 10.1371/journal.pone.0004654

Abstract

To better design association studies for complex traits in isolated populations it's important to understand how history and isolation moulded the genetic features of different communities. Population isolates should not “a priori” be considered homogeneous, even if the communities are not distant and part of a small region. We studied a particular area of Sardinia called Ogliastra, characterized by the presence of several distinct villages that display different history, immigration events and population size. Cultural and geographic isolation characterized the history of these communities. We determined LD parameters in 8 villages and defined population structure through high density SNPs (about 360 K) on 360 unrelated people (45 selected samples from each village). These isolates showed differences in LD values and LD map length. Five of these villages show high LD values probably due to their reduced population size and extreme isolation. High genetic differentiation among villages was detected. Moreover population structure analysis revealed a high correlation between genetic and geographic distances. Our study indicates that history, geography and biodemography have influenced the genetic features of Ogliastra communities producing differences in LD and population structure. All these data demonstrate that we can consider each village an isolate with specific characteristics. We suggest that, in order to optimize the study design of complex traits, a thorough characterization of genetic features is useful to identify the presence of sub-populations and stratification within genetic isolates.

Item Type:Article
ID Code:1616
Status:Published
Refereed:Yes
Uncontrolled Keywords:Population structure, Ogliastra, Sardinia
Subjects:Area 05 - Scienze biologiche > BIO/18 Genetica
Divisions:002 Altri enti e centri di ricerca del Nord Sardegna > CNR-Consiglio Nazionale delle Ricerche > Istituto di genetica delle popolazioni, Alghero
Publisher:Public Library of Science
ISSN:1932-6203
Deposited On:18 Aug 2009 10:05

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