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Genetic loci linked to type 1 diabetes and multiple sclerosis families in Sardinia

Pitzalis, Maristella and Zavattari, Patrizia and Murru, Raffaele and Deidda, Elisabetta and Zoledziewska, Magdalena and Murru, Daniela and Moi, Loredana and Motzo, Costantino and Orrù, Valeria and Costa, Gianna and Solla, Elisabetta and Fadda, Elisabetta and Schirru, Lucia and Melis, Maria Cristina and Lai, Marina and Mancosu, Cristina and Tranquilli, Stefania and Cuccu, Stefania and Rolesu, Marcella and Secci, Maria Antonietta and Corongiu, Daniela and Contu, Daniela and Lampis, Rosanna and Nucaro, Annalisa and Pala, Gavino and Pacifico, Adolfo and Maioli, Mario and Frongia, Anna Paola and Chessa, Margherita and Ricciardi, Rossella and Lostia, Stanislao and Marinaro, Anna Maria and Milia, Anna Franca and Landis, Novella and Zedda, Maria Antonietta and Whalen, Michael B. and Santoni, Federico and Marrosu, Maria Giovanna and Devoto, Marcella and Cucca, Francesco (2008) Genetic loci linked to type 1 diabetes and multiple sclerosis families in Sardinia. BMC Medical Genetics, Vol. 9 (3), p. 1-10. ISSN 1471-2350. Article.

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DOI: 10.1186/1471-2350-9-3

Abstract

Background. The Mediterranean island of Sardinia has a strikingly high incidence of the autoimmune disorders Type 1 Diabetes (T1D) and Multiple Sclerosis (MS). Furthermore, the two diseases tend to be co-inherited in the same individuals and in the same families. These observations suggest that some unknown autoimmunity variant with relevant effect size could be fairly common in this founder population and could be detected using linkage analysis. Methods. To search for T1D and MS loci as well as any that predispose to both diseases, we performed a whole genome linkage scan, sequentially genotyping 593 microsatellite marker loci in 954 individuals distributed in 175 Sardinian families. In total, 413 patients were studied; 285 with T1D, 116 with MS and 12 with both disorders. Model-free linkage analysis was performed on the genotyped samples using the Kong and Cox logarithm of odds (LOD) score statistic. Results. In T1D, aside from the HLA locus, we found four regions showing a lod-score ≥1; 1p31.1, 6q26, 10q21.2 and 22q11.22. In MS we found three regions showing a lod-score ≥1; 1q42.2, 18p11.21 and 20p12.3. In the combined T1D-MS scan for shared autoimmunity loci, four regions showed a LOD >1, including 6q26, 10q21.2, 20p12.3 and 22q11.22. When we typed more markers in these intervals we obtained suggestive evidence of linkage in the T1D scan at 10q21.2 (LOD = 2.1), in the MS scan at 1q42.2 (LOD = 2.5) and at 18p11.22 (LOD = 2.6). When all T1D and MS families were analysed jointly we obtained suggestive evidence in two regions: at 10q21.1 (LOD score = 2.3) and at 20p12.3 (LOD score = 2.5). Conclusion. This suggestive evidence of linkage with T1D, MS and both diseases indicates critical chromosome intervals to be followed up in downstream association studies.

Item Type:Article
ID Code:113
Status:Published
Refereed:Yes
Uncontrolled Keywords:T1D, MS, diabetes, multiple sclerosis, inflammatory disorders, microsatellite genotyping
Subjects:Area 06 - Scienze mediche > MED/49 Scienze tecniche dietetiche applicate
Divisions:001 Università di Sassari > 03 Istituti > Clinica medica generale e terapia medica
001 Università di Sassari > 01 Dipartimenti > Scienze biomediche
001 Università di Sassari > 01 Dipartimenti > Neuroscienze, scienze materno infantili
002 Altri enti e centri di ricerca del Nord Sardegna > CRS4 Center for Advanced Studies, Research and Development in Sardinia, Pula
Publisher:BioMed Central
ISSN:1471-2350
Copyright Holders:© 2008 Pitzalis et al.
Deposited On:18 Aug 2009 10:01

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